rs252534706 SNP Detail

Summary

• ID
  rs252534706
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86540111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGTTTT AGATGCTGAG
  GCTTATCCCT AGCACTTTCC TTCCTGAATC AGCAGTCACT CCCAGGAGCA GACTGCTAGG
  AGCTTTTGCC TGCAGATAAA TGGGCACTCC TAAGATCTTC TCTGGTTATT TTGTATCATT
  AGCAACATTT TGGGCACTGG ACCTTGTAAT CTGAATGGAG AAACACCAAC AGCCACTCTG
  Y
  CCCACTAACT TGCAGAGCTT ATCAACATAG CTTCAAATGC ACCGACCTCT GCACAACTTC
  ATCATCTGTC CTTGAGCCTT CTCGGCTTTT ACCCAGGTCC TCTTCCACTG TGCCATCCAC
  GTCGACTTCA TCATCAGCTC TGACGAACCC TGGGGAGAAA GGTTACAACT CTCCACACTA
  TTGCTTCCTC TCCTTCGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381139390	MGP_WTSI_10_86166992	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252534706					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381139390	MGP_WTSI_10_86166992	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86540111 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2068	CpG island 2068	509 bp proximal
Gm54730	predicted gene, 54730	1069 bp downstream
Hsp90b1	heat shock protein 90, beta (Grp94), member 1	within coordinates
Rr436506	regulatory region 436506	1595 bp distal
Rr436507	regulatory region 436507	1031 bp proximal
Rr436508	regulatory region 436508	1252 bp proximal
Rr436509	regulatory region 436509	1608 bp proximal
Tssr95004	transcription start site region 95004	673 bp downstream
Tssr95005	transcription start site region 95005	34 bp upstream
Tssr95006	transcription start site region 95006	1609 bp upstream
Tssr95007	transcription start site region 95007	1636 bp upstream
Tssr98786	transcription start site region 98786	1223 bp upstream
Tssr98787	transcription start site region 98787	640 bp upstream
Tssr98788	transcription start site region 98788	80 bp downstream
Tssr98789	transcription start site region 98789	1140 bp downstream
Tssr98790	transcription start site region 98790	1206 bp downstream
Tssr98791	transcription start site region 98791	1238 bp downstream
Ttc41	tetratricopeptide repeat domain 41	1564 bp upstream