rs252544187 SNP Detail

Summary

• ID
  rs252544187
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:59702492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCATGAAC CTTTTCTTAG
  CCAGGCCTTT AATCCCATCA TTCAGGCTGA TTTCTGTAAT TTGAAGCTAG CCCTGCTAGG
  CCAGCTAAGG CTACAATGTG AGACCCTGCC CCTCACCAAG AGAGAGAGAG AGAGTGAGAG
  AGAGAGGAGA GGAGGGGAGG GGAGGGGAGG GGAGGGGAGG GGAGGGGAGG GGAAGAGAAG
  W
  AAGCAGGACA CAGTATTGTG GGTATATTGA AAGAAAGAAA GAAAGAAAGA AAGAAAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAAAGG AAGAAAGAAA GAAAGAAAGA
  AAGAAAGAAA GAAAGAAAGA AGAAAGAAAG AAAGCCCTTT GCAAGATTTG CTGTGAGAGT
  GTGGATTGTG TCTCCTAGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349791018	MGP_WTSI_1_59720177	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252544187					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349791018	MGP_WTSI_1_59720177	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59702492 () rs orientation: forward

Symbol	Name	Function Class
Gm71026	predicted gene, 71026	1795 bp downstream
Rr16806	regulatory region 16806	1692 bp distal
Rr22466	regulatory region 22466	909 bp proximal
Rr371358	regulatory region 371358	170 bp upstream
Sumo1	small ubiquitin-like modifier 1	within coordinates
Tssr11830	transcription start site region 11830	892 bp upstream