rs252548227 SNP Detail

Summary

• ID
  rs252548227
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:60802072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAGAGCC CCTGAGAAAA
  TGAGTTTCAT TTTTATTTTT TAAGGTTCAA TCCAGGAGCC CTGCTATGGC GGGTGACTCC
  CATAGTCTCT GACAGGTCTA CACTGTGGGC TGTCTCAGTA CTCTCTAGCA CCCCACAGAG
  GTGACCTCAG TGCCTGAAGC CTTGCACTTG GTCAGAGTGA CTGAAAAGGT TGAGGATTGC
  Y
  GAGCCCTGTG GGACACCTGG CTGCTCTGGT GGTGTGAACA TCATGGCAAT CTCCACAGAA
  GGAGTGCCAC TCCAGGGCTG CTTTGAATCT AGACCAGTAG GCAGTCAGAT GTCTGCTGTT
  CTGGGGTTTG AGAGGCCCTG GCTTGAGGCC TGAAGTCCCA TGAAGAGACT CTGTGTGACT
  TGGCTCAAAT GCCTGCCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324366843	CHEV_13_60755619	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252548227					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:60802072 () rs orientation: forward

Symbol	Name	Function Class
Dapk1	death associated protein kinase 1	within coordinates
Rr273140	regulatory region 273140	within coordinates
Rr276884	regulatory region 276884	529 bp proximal
Rr284608	regulatory region 284608	within coordinates