rs252550514 SNP Detail

Summary

• ID
  rs252550514
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:95254390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTAGAAA GCCTGTGTAA
  AGCCAGGGAG TAACTTAGCA GGATGCTTAC CTTCTTTAGG TCCCTAACGT TTTCTGTAAA
  CTTAAAAACA AGATGTCGGT GAAAGGTTAG CATGAACGGA CAGGCGGATC CCTCTGGAGT
  TCTGTGTAGT GAGTTGGAGG CCCAAGTTAA ACTTTTTAAG CCTCTACAAT GTGCAGGGAT
  M
  ACTAAGACCA ACGTTTTATG AATGGTTGAT CCTTTCTTGG TAGAAAACCT CAGAGGAAGT
  GGAAGTGTGT GCCTGTGCTT CTGCACTCCT AAAGGGTTTT GGTTTTTTGT TGGTTTTTTT
  GTTGTTGGTG GTGGTGTTTT TTTTTTTTTT TTTTTTGAGA TCATACAGAT TAATTTTTCT
  TTGTCAGGTG TAGTAAATCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381349772	MGP_WTSI_10_94881162	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252550514					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381349772	MGP_WTSI_10_94881162	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:95254390 () rs orientation: forward

Symbol	Name	Function Class
5730420D15Rik	RIKEN cDNA 5730420D15 gene	within coordinates
Cpgi2139	CpG island 2139	834 bp distal
Rr225467	regulatory region 225467	189 bp distal
Rr385140	regulatory region 385140	1303 bp downstream
Socs2	suppressor of cytokine signaling 2	1348 bp upstream
Tssr95359	transcription start site region 95359	1535 bp downstream
Tssr95360	transcription start site region 95360	1261 bp downstream
Tssr95361	transcription start site region 95361	1143 bp downstream
Tssr95362	transcription start site region 95362	154 bp upstream
Tssr99037	transcription start site region 99037	1796 bp upstream
Tssr99038	transcription start site region 99038	1694 bp upstream
Tssr99039	transcription start site region 99039	1667 bp upstream
Tssr99040	transcription start site region 99040	1451 bp upstream
Tssr99041	transcription start site region 99041	1418 bp upstream
Tssr99042	transcription start site region 99042	1259 bp upstream