rs252551415 SNP Detail

Summary

• ID
  rs252551415
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:110255924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTTACAT GTCCTATCTC
  TGTGAGTATA AGATAGCCTT TAAGTAGCAG GGATTCTGAT AAGAATGGAA ACTCAGGATT
  CTGTTTCTTA AGGGTATCCT TATGGGTCTG GTTGGACTTA GAGAATTAGT AACCAACGTG
  CTTTACAGGC TAATAGAAGA AAGCAAGAGT CCTTTTTTTA TATTAGGAGA TTAGTAAAAC
  W
  GGCAGAGGAC TGAACAGCTG AAACTTTAAG GGTTAATATC AGTGTTTGCA TAGAAAACCA
  GTGACTTTGG GATATACAGA TTGGTGGGTA GTTAAAGTGA GCTATATATT ACCTTATGTA
  TGTGTTAATA AGACATTGCA AACTATAGCT ATGAGTGACT CACTTGAACT ACTCCAGACC
  CTCCTCACTG TGTGTTGCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321256585	CHEV_4_110071332	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252551415					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110255924 () rs orientation: forward

Symbol	Name	Function Class
Agbl4	ATP/GTP binding protein-like 4	Intron
Cpgi14588	CpG island 14588	724 bp distal
Rr597431	regulatory region 597431	926 bp distal
Rr597432	regulatory region 597432	349 bp distal
Tssr38370	transcription start site region 38370	1019 bp downstream
Tssr38371	transcription start site region 38371	964 bp downstream
Tssr38372	transcription start site region 38372	919 bp downstream