rs252556249 SNP Detail

Summary

• ID
  rs252556249
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31954169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCAATCT GGTCTAAAAT
  GTCACCTGAT AAAATACCAA CCAAAGCCAG GTCCAGGGTG AAGATAATCC TGTCTCTGCA
  TTCCCAGCCG TCATGTCTAG AGGAGTGGAA AAGGCTGAGC CCAGACAGCA GCAAATGGAC
  TGGCTTTTGG CAGGATTCAG AGTGATCAGA AATTTCTCTG GTCACAGCGC AGAACATGCC
  Y
  GCTCCTTGTG GAGACAGTTG TCACAGTAAA TTCAAGGCCA GTCTGTGAGC CATACCGAGT
  CCCAGGCCAA TCTGGGGTAC AGTGTGAAAC TCCGTCTCAA GGGACAGAAG TTTCCAGTAC
  CAGAAGGGCT GCTGAGCGTG GCAATAAGCT TCATGCCTTG CAGGACAGGC TGAGCGAAGG
  GGCAATAGAG AAACTGGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353550468	MGP_WTSI_2_31919677	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252556249					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353550468	MGP_WTSI_2_31919677	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31954169 () rs orientation: forward

Symbol	Name	Function Class
Fam78a	family with sequence similarity 78, member A	within coordinates
Gm16534	predicted gene 16534	within coordinates
Rr367160	regulatory region 367160	1648 bp downstream
Rr367161	regulatory region 367161	814 bp downstream
Rr367162	regulatory region 367162	811 bp upstream
Rr554785	regulatory region 554785	4 bp distal
Rr554786	regulatory region 554786	within coordinates
Rr554787	regulatory region 554787	610 bp proximal
Rr554788	regulatory region 554788	1885 bp proximal
Tssr17240	transcription start site region 17240	812 bp downstream
Tssr23448	transcription start site region 23448	898 bp upstream
Tssr23449	transcription start site region 23449	907 bp downstream
Tssr23450	transcription start site region 23450	932 bp downstream
Tssr23451	transcription start site region 23451	1199 bp downstream
Tssr23452	transcription start site region 23452	1256 bp downstream
Tssr23453	transcription start site region 23453	1281 bp downstream