rs252563672 SNP Detail

Summary

• ID
  rs252563672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116551604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTAATTT TTTTTTATTT
  TGTTTTTTCT TATTAGGTAT TTATTTCATT TACATTTCCA AAGCTATCCC AAAAGTCCTC
  CACCCGCTTC CCCACCCACC CACTCCCACT TTTTGGCCCT GACATTCCCC TGTACTGAGG
  CATATAAAGT TTGCATGGGC CTCTCTTTCC ACTGATAGCC AATTAGGCCA TCTTCTGATA
  Y
  ATATGCAGCT AGAGACACGA GCTCTGGGGG GTACTGGTTT GTTCATAATG TTGTTCCACC
  TATAGGGTTG CAGATCCCTT TAGCTCCTTG GTTACTTTCT CTAGCTCCTC CATTGAGGAA
  GAATTTTTCT TTTGACAAAA AAATAAACAA AAAACTAGAA AGGTAATTTA GTGGTTAAAT
  GAATTTGCTC CTTGCAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277807	CHEV_4_116367012	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252563672					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116551604 () rs orientation: forward

Symbol	Name	Function Class
Prdx1	peroxiredoxin 1	within coordinates
Tssr38561	transcription start site region 38561	662 bp downstream
Tssr38562	transcription start site region 38562	552 bp downstream
Tssr38563	transcription start site region 38563	447 bp downstream
Tssr38564	transcription start site region 38564	312 bp downstream
Tssr38565	transcription start site region 38565	279 bp downstream
Tssr38566	transcription start site region 38566	1612 bp upstream