rs252566278 SNP Detail

Summary

• ID
  rs252566278
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98810909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCGGTCTT CAGTAGACTG
  TAGATCATGG AGTACATTCC CTTCGCTTGT TATCCCTACC ATGCTGAAAA TAGTTCAACA
  GGGCATTAAA CAGGGCAACA CACACGGAGG GCACTAAACA GGGCAACGCA CACAGTGGGT
  ACTAAACCGA GCAACACACA CCGTGGCCAT TCAACAGACC AACTCACGAT GGGCATTAAA
  Y
  AGGGCAACGC ACACAGTGGA CATTTAAAAA ACAACAAAAA AACCCCACTT GAACGGATTT
  GTACTGAGTT CTCATCAGCT GTAGTACCGC ACTGTGAGAT CATCTCACAA AAGACAGAGC
  ATACAGAACC AAGCCCAAAC CGGGTGAGGC TGTGCGGCTG CCTGTGGGTC ATTCGGTACC
  GGCTCGCGCC AGAACCCGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321222359	CHEV_4_98589363	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252566278					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98810909 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14474	CpG island 14474	70 bp proximal
Rr398351	regulatory region 398351	539 bp upstream
Rr595805	regulatory region 595805	353 bp distal
Rr595806	regulatory region 595806	648 bp proximal
Rr595807	regulatory region 595807	938 bp proximal
Rr595808	regulatory region 595808	1218 bp proximal
Tssr37901	transcription start site region 37901	256 bp upstream
Tssr37902	transcription start site region 37902	987 bp upstream
Tssr37903	transcription start site region 37903	1052 bp upstream
Tssr37904	transcription start site region 37904	1079 bp upstream
Tssr37905	transcription start site region 37905	1143 bp upstream
Tssr37906	transcription start site region 37906	1173 bp upstream
Tssr37907	transcription start site region 37907	1236 bp upstream
Usp1	ubiquitin specific peptidase 1	1138 bp upstream