rs252587292 SNP Detail

Summary

• ID
  rs252587292
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4643904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGTGCGT CAAAGTAGCC
  GGAGTCACGA GAGGACAGTG GGCGGATGCT TGGCGTCCAC TGCTCGCGTT ATAACAGCTA
  AAGTTGAGAA CTGTTAAGCG CTGACTTCTG CATTATGCAT TTCTAGGGTA TATATAGGAA
  GCACAGCGAG GAGTCTCTGT AGCCAAAGTT CACTGCTTAT TTAAGGGAGA AGAGGCACCT
  G
  CAAGTGCATA GTGAGTAGGT AAACCGAGGC TGCAAGTTTC ATTCTGCTGA AAGACACTGT
  TTGCAGGTAT TGGTCATGCT CTGTGTTATT CAGTGATTGT CCGTGGCAAA TACACTCATT
  TGAAACTTGC ATTCATAACG AACAGGAACA TTTTGGATAG ACCCAGCTAC TTTACAATAG
  GAATTCAAGT TGACACAGAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323874152	CHEV_12_4600710	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252587292					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4643904 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4378	CpG island 4378	within coordinates
Gm3625	predicted gene 3625	173 bp upstream
Gm48678	predicted gene, 48678	1436 bp downstream
Itsn2	intersectin 2	within coordinates
Rr256467	regulatory region 256467	1704 bp distal
Rr265387	regulatory region 265387	within coordinates
Tssr3767	transcription start site region 3767	72 bp downstream
Tssr112557	transcription start site region 112557	1256 bp downstream
Tssr112558	transcription start site region 112558	1231 bp downstream
Tssr112559	transcription start site region 112559	1068 bp downstream
Tssr112560	transcription start site region 112560	959 bp downstream
Tssr112561	transcription start site region 112561	817 bp downstream
Tssr112562	transcription start site region 112562	757 bp downstream
Tssr112563	transcription start site region 112563	40 bp downstream
Tssr115637	transcription start site region 115637	1380 bp upstream
Tssr115638	transcription start site region 115638	209 bp upstream
Tssr115639	transcription start site region 115639	168 bp upstream
Tssr115640	transcription start site region 115640	151 bp upstream
Tssr115641	transcription start site region 115641	114 bp upstream
Tssr115642	transcription start site region 115642	92 bp upstream
Tssr115643	transcription start site region 115643	1249 bp downstream