rs252592709 SNP Detail

Summary

• ID
  rs252592709
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:58884432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGACACCC AGCCCTCAGC
  ATCCGCCCCC ACCCCTGCAG AACTGGCTGG AACCAGCTCG AGGCTGAGAC TGTATTTTTC
  CATACCTGTT TATACACCCC CCCCCCCCAA TCTGTTTACT GTGTGCTCCC CCTCCCATCT
  TAGTTCTCCA AATCCGCAAT GCACCTGACA ATCTTTGTTG AAAGTGCGCC ATAGCTAATG
  Y
  TGGTAAGCCT TGGTTATGGG TACATTTCCA AGCCTGACTG CGTCTTAAAT TCACTTTCAG
  AGAACAGAAA TGCAGGAGAA CCATTTTCCT TCACCTTTGC AGACCCACAG TGCGTGCCTG
  TATCTGCGCA GACCATCTTT GGCTCTTAGA GCACAGTTAG ACATCTCTGT TAAACCTATA
  TCCTCGTGGC AAATTGTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368457278	MGP_WTSI_6_58857441	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252592709					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368457278	MGP_WTSI_6_58857441	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:58884432 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17490	CpG island 17490	150 bp distal
Herc3	hect domain and RLD 3	within coordinates
Nap1l5	nucleosome assembly protein 1-like 5	371 bp upstream
Rr146376	regulatory region 146376	within coordinates
Tssr56753	transcription start site region 56753	868 bp downstream
Tssr56754	transcription start site region 56754	1728 bp upstream
Tssr61172	transcription start site region 61172	1186 bp upstream
Tssr61173	transcription start site region 61173	405 bp upstream
Tssr61174	transcription start site region 61174	349 bp upstream
Tssr61175	transcription start site region 61175	328 bp upstream
Tssr61176	transcription start site region 61176	316 bp upstream