rs252596827 SNP Detail

Summary

• ID
  rs252596827
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:29939812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATTTGCC ACCACTGCCC
  TGCGTGTTAG AATTCTTAAA TGTCATGTGG CAAGAGGCTT CAGCCAGACT CTGAGGCGAG
  GGGACTCCTT TCCCTATTCT CTACCTTATA ACTGGCTTTG TCTTTCGGCG CTGCTTCAAT
  AGAAAGCTTG GGTTGCTGGG CTGTCAGCCC TGGAGTATGC AAGCACACAC ACCTTCCACT
  Y
  GTCACTAGGC CAGACTCCTT GATTCCTGCC ATTGAGGGTG GTAGTGGGTA AGATTGAGAG
  CAGAAAGGTG GAAGGAGAGG TGGAGGAAGG TAAAGGAAAG GGCGGGAACT TTTGTGCTTA
  GTTTTCATTT CAGTCTTGGA CAGCCATCTT GTAGGGCTGA AAGTCAATTA GAAAAGAGAT
  CTGGCCAAAT TCTATGTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364407750	MGP_WTSI_5_30061354	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252596827					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364407750	MGP_WTSI_5_30061354	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:29939812 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15670	CpG island 15670	699 bp proximal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Dnajb6	DnaJ heat shock protein family (Hsp40) member B6	1084 bp upstream
Gm5129	predicted gene 5129	520 bp downstream
Gm72214	predicted gene, 72214	1608 bp upstream
Rr377760	regulatory region 377760	431 bp upstream
Rr608877	regulatory region 608877	384 bp proximal
Rr608878	regulatory region 608878	954 bp proximal
Rr608879	regulatory region 608879	1619 bp proximal
Rr608880	regulatory region 608880	1858 bp proximal
Tssr45546	transcription start site region 45546	911 bp upstream
Tssr45547	transcription start site region 45547	925 bp upstream
Tssr45548	transcription start site region 45548	1008 bp upstream
Tssr45549	transcription start site region 45549	1023 bp upstream
Tssr45550	transcription start site region 45550	1153 bp upstream
Tssr45551	transcription start site region 45551	1177 bp upstream
Tssr45552	transcription start site region 45552	1298 bp upstream
Tssr45553	transcription start site region 45553	1637 bp upstream
Tssr50466	transcription start site region 50466	1069 bp downstream
Tssr50467	transcription start site region 50467	1088 bp downstream
Tssr50468	transcription start site region 50468	1114 bp downstream
Tssr50469	transcription start site region 50469	1598 bp downstream