rs252603460 SNP Detail

Summary

• ID
  rs252603460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103876200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGC TGGGTGGTGC AGAGGCTTCT
  Y
  GGATGCTGTT TCGCCTATTT CCCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320859274	CHEV_3_103772807	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252603460					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103876200 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13642	CpG island 13642	within coordinates
Phtf1	putative homeodomain transcription factor 1	within coordinates
Phtf1os	putative homeodomain transcription factor 1, opposite strand	568 bp upstream
Rr582453	regulatory region 582453	428 bp distal
Rr582454	regulatory region 582454	251 bp distal
Rr582455	regulatory region 582455	within coordinates
Rr582456	regulatory region 582456	140 bp distal
Rr582457	regulatory region 582457	63 bp distal
Tssr31039	transcription start site region 31039	912 bp downstream
Tssr31040	transcription start site region 31040	490 bp downstream
Tssr31041	transcription start site region 31041	223 bp downstream
Tssr34872	transcription start site region 34872	563 bp upstream