rs252607419 SNP Detail

Summary

• ID
  rs252607419
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79897644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCATATA ATCCCATCAT
  TAGGGAAGCT GAAACAAAAA GATTACGTGT GTTCTAGACC AGCTTGGACT ACAACGTGAG
  ACCCTGCCCC CCATCAAAAA TCATATAACT ATGGGCTGAT GAGATGGCTC AGCTGGAGAA
  GAGGGCTTGT TGCTCAAGCA TGAGGGCCTT GAGTTTGAAC CCATAGTGCT CACATTAACA
  M
  AACAAAACAA AAGATGGCTG TGGGGTTGTG GTGGTGGCCA GTGCCTTTGA TCCCATCACT
  CAGGAGGCAG ATGCAAGCAG ATCTCTCAGT TCAAGACCAT CCTGGTCTAT AGAGCAAAAT
  CCAGGACAGC TAGGACTACA CAGAAATCCT TTCTAGGAAA TCTAAAAGGA AAGGCCAGAG
  CAATATTAAC CTTTGCTTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322280553	CHEV_7_87392782	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252607419					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79897644 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19326	CpG island 19326	1091 bp distal
Gm73873	predicted gene, 73873	1398 bp upstream
Rr168083	regulatory region 168083	643 bp distal
Rr400401	regulatory region 400401	1400 bp downstream
Tssr2310	transcription start site region 2310	1532 bp downstream
Tssr67422	transcription start site region 67422	1525 bp downstream
Tssr67423	transcription start site region 67423	1467 bp downstream
Tssr67424	transcription start site region 67424	1462 bp downstream
Tssr67425	transcription start site region 67425	1440 bp downstream
Tssr67426	transcription start site region 67426	1376 bp downstream
Tssr67427	transcription start site region 67427	1317 bp downstream
Ttll13	tubulin tyrosine ligase-like family, member 13	within coordinates