rs252611644 SNP Detail

Summary

• ID
  rs252611644
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:66686269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGCACTG AGGAGTGACA
  GAGCTTTGGA GGAAGGGACA TTCAGAGAGA CATGAGTGGG GGGACAACTT TTTTTAGCAC
  CTTTTGCAGA ACCCCTCCTG CTTGAATGAA TTCATTTCTC TCACTGGCAT TCCTTCCCTT
  AACATGGCTG CCCATCCAGT CACTGGGATT CAGCCAGGAT GTTAAGCCAG AGACAGTCCT
  R
  CCCTGCCTGA GCCTTGCTTA CCAGAGCCAG TGGGTGGACC TAGAGGGCAG CCCACATTTG
  TGGTGCTGCT CTAAAGGAGA CACAGTGAAC TCTAGGGCAG AGGTCCACAG GCAGTGGTGG
  TTGGGGACAA GGTATACGTG GGGATCATTG AGTTGTTACT TTAGGGGTCA GATAGCTTCA
  CAACAAGCCA GAGTAAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394379577	MGP_WTSI_15_66645982	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252611644					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394379577	MGP_WTSI_15_66645982	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:66686269 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr369944	regulatory region 369944			179 bp downstream
Rr503569	regulatory region 503569			1838 bp distal
Rr503570	regulatory region 503570			1337 bp distal
Rr503571	regulatory region 503571			within coordinates
Rr503572	regulatory region 503572			269 bp distal
Rr503573	regulatory region 503573			518 bp proximal
Rr503574	regulatory region 503574			1576 bp proximal
Sla	src-like adaptor			Intron
Tg	thyroglobulin			Intron
				Noncoding-Transcript-Variant
Tssr134588	transcription start site region 134588			1771 bp upstream
Tssr134589	transcription start site region 134589			1740 bp upstream
Tssr134590	transcription start site region 134590			1710 bp upstream
Tssr134591	transcription start site region 134591			1688 bp upstream
Tssr134592	transcription start site region 134592			1194 bp upstream