rs252613339 SNP Detail

Summary

• ID
  rs252613339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134334092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTCGCTG CACGAGCTGC
  GGGCTGAGTT CACTGCTCCG CTTGCTTCTG AGGTTTTGGC ATGCTTTCTC GCTGGAGCTC
  AGGATCGCTA CTCCTGGTCC TCCACCCACA CCCTGGCACT TCCTCAGCGT GGCGATCACG
  CTTCCTCCTC TATCCACAGA GCCCGGTCTT GCTAGCCTCT CTGGGGGTGG GGCTGCTTAC
  Y
  CTGCTCGGCC TGGCTCTGGG TACCTACTTG GTTCGAAGAT CCCGCCGGCC GCAGGTTACT
  CTCCAGGACC CGGATGAGAA GTACCTGCTG CGATTGCTAG ACAAGACGGT AAGTTGTGAA
  GAAGTGGGCT AGGGCAGAGA GTGGATACTT AGTTTGAGGG ATAGCATCGA GAGTGGTTGG
  ATTGCTCCAA AAGACTTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351517941	MGP_WTSI_1_136302931	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252613339					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351517941	MGP_WTSI_1_136302931	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134334092 () rs orientation: forward

Symbol	Name	Function Class
Cpgi767	CpG island 767	within coordinates
Cyb5r1	cytochrome b5 reductase 1	within coordinates
Rr372070	regulatory region 372070	248 bp downstream
Tssr217	transcription start site region 217	384 bp downstream
Tssr218	transcription start site region 218	292 bp downstream
Tssr8875	transcription start site region 8875	630 bp downstream
Tssr8876	transcription start site region 8876	618 bp downstream
Tssr8877	transcription start site region 8877	562 bp downstream
Tssr8878	transcription start site region 8878	541 bp downstream
Tssr8879	transcription start site region 8879	349 bp downstream
Tssr8880	transcription start site region 8880	325 bp downstream
Tssr8881	transcription start site region 8881	28 bp downstream
Tssr8882	transcription start site region 8882	within coordinates
Tssr8883	transcription start site region 8883	20 bp upstream
Tssr8884	transcription start site region 8884	1732 bp upstream
Tssr13793	transcription start site region 13793	719 bp upstream