rs252624315 SNP Detail

Summary

• ID
  rs252624315
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115053562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCTGTCT CACCCGCCCT
  CTCTCCGTGG CTAAAGGCTA CTGCCAAAAC TAAGCCCTTT ATTTATTATT CATTTATCTG
  TTCTCAGACA GCCTGTCTTC CAGGTGGGCT GCAAGGAGCC TCAGTCTCTA CCAAGCCCTA
  CAAGTTTCTA GAAGGGATCA GAGCCCAAAC CTCTGTCTAT ATGCATGTCC AGGGATAGAG
  S
  GGCGGCTCCA CAAGAAGAAA CTTTGTTATT TAAACAACTC TACTCCGGAG TTATTCTGTT
  ACAGTTACCC TGTTACAGTG TTACTGTGTT ACAGAAGACA TCCGTCCGGT TCTTAAGTTG
  GCTCTGGGGA GGGGGAGGAG TGAGTGTGGG GGAGCATGGG GTGGTTTCCC CAGCAACTGT
  CGCTCCCCTC TCTCGGGCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384822762	MGP_WTSI_11_115024050	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252624315					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384822762	MGP_WTSI_11_115024050	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115053562 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4109	CpG island 4109	184 bp proximal
Cpgi4110	CpG island 4110	1998 bp proximal
Gm72084	predicted gene, 72084	within coordinates
Nherf1	NHERF family PDZ scaffold protein 1	605 bp upstream
Rab37	RAB37, member RAS oncogene family	500 bp downstream
Rr369433	regulatory region 369433	107 bp upstream
Rr403111	regulatory region 403111	326 bp upstream
Rr459781	regulatory region 459781	1656 bp distal
Rr459782	regulatory region 459782	1258 bp distal
Rr459783	regulatory region 459783	115 bp proximal
Rr459784	regulatory region 459784	1576 bp proximal
Rr459785	regulatory region 459785	1833 bp proximal
Tssr3727	transcription start site region 3727	620 bp upstream
Tssr105840	transcription start site region 105840	597 bp upstream
Tssr105841	transcription start site region 105841	638 bp upstream
Tssr105842	transcription start site region 105842	664 bp upstream
Tssr105843	transcription start site region 105843	681 bp upstream
Tssr105844	transcription start site region 105844	702 bp upstream
Tssr111730	transcription start site region 111730	393 bp downstream