rs252624364 SNP Detail

Summary

• ID
  rs252624364
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:85941706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTAACTG GGCGACTGGT
  CAAGGGAGGC TTTGTGGAGC TGAAACTTTG GAGTTAGCTT GGAAGGTTGG GTAGGGCCAG
  AGTGGAGAGG CTCCCCCCTC CTCCGCGCCC CAGGGAGGAT ATGGTCTAGG CAATCCTGGA
  GGCAGGAAAG TAGCACTTGT GCTTGCAGGG GGCGGTGGGG GTGGGGCGAC GACCAGAGTC
  Y
  GGTTTTGCTG TAGGACAGAG AGGAAGCAGG GAAAGCCAGG GGTAGGAGGA ACCAGCGAGA
  TTGGTGTGGC ATTGGGCTGG GATGCCGCAC AAAGGTGACT CAGAGGAGGT TCCTGCCCAA
  AGTAGCTCTC ATCTTGCCAA GACCAAGCCC TGCAGGCAGC TTAGCCTGGC ATCTCACACT
  GCCAGCCAAG AGCCATTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394822155	MGP_WTSI_15_85887935	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252624364					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394822155	MGP_WTSI_15_85887935	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85941706 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7499	CpG island 7499	446 bp proximal
Gm41375	predicted gene, 41375	within coordinates
Gramd4	GRAM domain containing 4	190 bp upstream
Rr507410	regulatory region 507410	824 bp distal
Rr507411	regulatory region 507411	within coordinates
Rr507412	regulatory region 507412	732 bp proximal
Rr507413	regulatory region 507413	748 bp proximal
Rr507414	regulatory region 507414	1233 bp proximal
Tssr132563	transcription start site region 132563	1241 bp upstream
Tssr132564	transcription start site region 132564	1291 bp upstream
Tssr135780	transcription start site region 135780	1070 bp downstream