rs252626519 SNP Detail

Summary

• ID
  rs252626519
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102283408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAT TCCTCTCCTG GGAACACATG
  S
  GAGGTTTCAG CTGGGCTACA TCTGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320437752	CHEV_2_102293220	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252626519					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102283408 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	783 bp distal
Fjx1	four jointed box 1	1271 bp upstream
Rr561695	regulatory region 561695	1719 bp distal
Rr561696	regulatory region 561696	474 bp distal
Rr561697	regulatory region 561697	380 bp proximal
Rr561698	regulatory region 561698	507 bp proximal
Tssr25397	transcription start site region 25397	1289 bp upstream
Tssr25398	transcription start site region 25398	1248 bp upstream
Tssr25399	transcription start site region 25399	1220 bp upstream