rs252627171 SNP Detail

Summary

• ID
  rs252627171
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19277849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGAAAAA GATGTGTTTC
  TCAAGTTCTG CCTGAAGCAC CCTGCATTTC CTTCATTTGA CTTACAGTAA ATTAATAATA
  ATAACAGTAA CAATAATAGA TCTACAGGAC TGTTCATTGC GAGGTAGGAG TCCTCAGCTT
  GGCTGTTAGG AACCGCTGTC TTCCTCCTAG TCTATCTGAA GCCTTCTCCT ACTCACGGAG
  Y
  CTCCGACCCT GCCGGAGCTC TAGAATGCAC TGGAGTTTAA AGACAATCTC CCTTTACAGA
  TTCACCCTCA TCAGGTTTAA TAACTTCCAC CCCAAATTAC CCCAACCCTC CTCATTCCCT
  CCTGTCATTT ATTTTCTGCC CCAGGGGCCA AGATCTTCTT CAGTGCCTCC CTACTGACTC
  CAGGGAACCC TCCGAGAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss348817475	MGP_WTSI_1_19197706	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252627171					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348817475	MGP_WTSI_1_19197706	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19277849 () rs orientation: forward

Symbol	Name	Function Class
Rr408233	regulatory region 408233	1470 bp distal
Rr408234	regulatory region 408234	1851 bp distal
Rr408235	regulatory region 408235	1101 bp distal
Rr408236	regulatory region 408236	1231 bp distal
Rr408237	regulatory region 408237	within coordinates
Rr408238	regulatory region 408238	1128 bp proximal
Rr408239	regulatory region 408239	1346 bp proximal
Tfap2b	transcription factor AP-2 beta	1289 bp upstream
Tssr6030	transcription start site region 6030	1315 bp upstream
Tssr6031	transcription start site region 6031	1358 bp upstream
Tssr6032	transcription start site region 6032	1373 bp upstream
Tssr6033	transcription start site region 6033	1389 bp upstream
Tssr6034	transcription start site region 6034	1413 bp upstream
Tssr6035	transcription start site region 6035	1445 bp upstream
Tssr6036	transcription start site region 6036	1469 bp upstream
Tssr6037	transcription start site region 6037	1487 bp upstream
Tssr6038	transcription start site region 6038	1515 bp upstream
Tssr6039	transcription start site region 6039	1530 bp upstream