rs252629561 SNP Detail

Summary

• ID
  rs252629561
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19429593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATTCAAG GCATAGCTGT
  GCAGTGGGTG CTTGGGAAGT TGGGAAAAGT AGCCCAACTG ACCCACATGA AGTGGTACAT
  GCCTTTCTCA GTTCCTGTAG AGATTGATTT GAAAACAAAG ATTCAAATAT TCAAGACCAA
  ACTAGGCTAG AGGGAGTGCA AGGAAAATCA GTTGAGATCC TATTTCAGAC TAAAAAGAAG
  R
  GTGGATATAG CTAAATAGAA GAGCCTGTAC TGGGTGCTGG AGAGATGGCT CAGCAGTTAA
  GAGCACTGAC TACTCTTCTA TAAGTCCTGA GTTCAATTCC CAGCAACCAC ATGGTGGCTC
  ACAACCATCT GTAATGGGAC CTGACGCCTG AAGACAGCTG CAGTGTACCT TATACATAAG
  ATAAACAAAT CTTAAATAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370754780	MGP_WTSI_7_20281017	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252629561					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370754780	MGP_WTSI_7_20281017	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19429593 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	441 bp downstream
Cpgi18507	CpG island 18507	853 bp proximal
Gm71725	predicted gene, 71725	1450 bp upstream
Rr155346	regulatory region 155346	408 bp proximal
Rr167193	regulatory region 167193	1992 bp distal
Rr167194	regulatory region 167194	807 bp proximal
Tssr2112	transcription start site region 2112	783 bp upstream
Tssr2113	transcription start site region 2113	808 bp upstream
Tssr2114	transcription start site region 2114	923 bp upstream
Tssr2115	transcription start site region 2115	959 bp upstream
Tssr2116	transcription start site region 2116	1034 bp upstream
Tssr2117	transcription start site region 2117	1056 bp upstream
Tssr2118	transcription start site region 2118	1163 bp upstream
Tssr2119	transcription start site region 2119	1172 bp downstream
Tssr2120	transcription start site region 2120	1235 bp upstream
Tssr2121	transcription start site region 2121	1267 bp upstream
Tssr2122	transcription start site region 2122	1987 bp downstream
Tssr64880	transcription start site region 64880	600 bp upstream
Tssr64881	transcription start site region 64881	652 bp upstream
Tssr64882	transcription start site region 64882	696 bp upstream
Tssr64883	transcription start site region 64883	734 bp upstream
Tssr64884	transcription start site region 64884	761 bp upstream
Tssr64885	transcription start site region 64885	840 bp upstream
Tssr64886	transcription start site region 64886	861 bp upstream
Tssr64887	transcription start site region 64887	893 bp upstream
Tssr64888	transcription start site region 64888	1112 bp upstream
Tssr64889	transcription start site region 64889	1206 bp upstream
Tssr64890	transcription start site region 64890	1252 bp upstream
Tssr64891	transcription start site region 64891	1275 bp upstream
Tssr64892	transcription start site region 64892	1308 bp upstream
Tssr64893	transcription start site region 64893	1343 bp upstream
Tssr64894	transcription start site region 64894	1797 bp upstream
Tssr64895	transcription start site region 64895	1893 bp upstream
Tssr64896	transcription start site region 64896	1919 bp upstream
Tssr70973	transcription start site region 70973	624 bp downstream
Tssr70974	transcription start site region 70974	670 bp downstream
Tssr70975	transcription start site region 70975	698 bp downstream
Tssr70976	transcription start site region 70976	733 bp downstream
Tssr70977	transcription start site region 70977	781 bp downstream
Tssr70978	transcription start site region 70978	796 bp downstream
Tssr70979	transcription start site region 70979	820 bp downstream
Tssr70980	transcription start site region 70980	830 bp downstream
Tssr70981	transcription start site region 70981	851 bp downstream
Tssr70982	transcription start site region 70982	865 bp downstream
Tssr70983	transcription start site region 70983	898 bp downstream
Tssr70984	transcription start site region 70984	915 bp downstream
Tssr70985	transcription start site region 70985	980 bp downstream
Tssr70986	transcription start site region 70986	1013 bp downstream
Tssr70987	transcription start site region 70987	1043 bp downstream
Tssr70988	transcription start site region 70988	1087 bp downstream
Tssr70989	transcription start site region 70989	1126 bp downstream
Tssr70990	transcription start site region 70990	1138 bp downstream
Tssr70991	transcription start site region 70991	1183 bp downstream
Tssr70992	transcription start site region 70992	1191 bp downstream
Tssr70993	transcription start site region 70993	1200 bp downstream
Tssr70994	transcription start site region 70994	1241 bp downstream
Tssr70995	transcription start site region 70995	1246 bp downstream
Tssr70996	transcription start site region 70996	1279 bp downstream
Tssr70997	transcription start site region 70997	1313 bp downstream
Tssr70998	transcription start site region 70998	1375 bp downstream
Tssr70999	transcription start site region 70999	1393 bp downstream
Tssr71000	transcription start site region 71000	1836 bp downstream
Tssr71001	transcription start site region 71001	1866 bp downstream
Tssr71002	transcription start site region 71002	1926 bp downstream
Tssr71003	transcription start site region 71003	1944 bp downstream
Tssr71004	transcription start site region 71004	1972 bp downstream