rs252632523 SNP Detail

Summary

• ID
  rs252632523
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:6259985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACTGCTA GCCACATGCC
  TCTCTTGTGG GGGCTGTGGG AGCGGTAACT TTGACAGGAG CCAGGGGTCC AGGAGACATG
  ATCAAACGCC TTCCATCCCA TGTAGGTGGA AAACCACCCA TTGGGTCCCA CTGGGGTTCA
  AGACCTCAGC TTGACTGGAG AACAGGCTGT CTGTGCATAG CCCATTCCCC CCACAGTGAT
  M
  TAAATATCAA ATGTGTAAAT TATTAAAAAC AATATACTTA TTTTTATTTT CTCTGTAGGT
  GTGTGTGCTG AAGTGTATGT GCATGCCACA GTGCACACCT GGTACCTGTA GGGGTCAGAA
  GAGAGAGTCT GATTCCCCCG AAACTGGAGT TATAGGTCAT TGTTAGCCAC CCAGTGTGGG
  TGCTGAGAAC CGAACCCAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320210422	CHEV_2_6176220	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252632523					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6259985 () rs orientation: forward

Symbol	Name	Function Class
A230108P19Rik	RIKEN cDNA A230108P19 gene	within coordinates
Gm13383	predicted gene 13383	196 bp downstream
Gm46730	predicted gene, 46730	1664 bp upstream
Rr551353	regulatory region 551353	1127 bp proximal
Rr551354	regulatory region 551354	1174 bp proximal
Tssr22443	transcription start site region 22443	1110 bp downstream