rs252638833 SNP Detail

Summary

• ID
  rs252638833
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:52116084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGAGAGAT GGCTCAGTGG TTAAGGGTGC TTACTGCTCT
  TGCAGATGAC TTGAATTTGG GTCGAAGCAC CTACATCTGG TAGCTTACAA CTGCCTATAA
  Y
  TCCAGTTTGA AGGAATCTGA CACCTCTCTG GCTCTCCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCAAATAAA TGTTTGTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323669904	CHEV_11_52038759	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252638833					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:52116084 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2851	CpG island 2851	761 bp distal
Gm73588	predicted gene, 73588	within coordinates
Rr386070	regulatory region 386070	341 bp downstream
Rr386071	regulatory region 386071	1572 bp upstream
Rr446812	regulatory region 446812	619 bp distal
Rr446813	regulatory region 446813	195 bp distal
Tssr3490	transcription start site region 3490	616 bp downstream
Tssr101317	transcription start site region 101317	901 bp downstream
Tssr101318	transcription start site region 101318	574 bp downstream