rs252639599 SNP Detail

Summary

• ID
  rs252639599
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58892134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGGGAC CCTGAAGCAG
  CTCAGGGATG GAGCGCATCA CCAGGATAGA CTTGTAGCTC ATCAAGGAAC GCTGGAAATG
  AGGACAGAGG GACATCCATT GGGCATGACT GGTCATGGCA GGAGGTGCGG TGCCCATTGC
  CTCTTTGCTC CAGAGGGGTT GGTTACCCAG GACACCTGGG GCTTCTGTGC CTGCTGCTTT
  W
  TTGCTCTGCC CCACCACCTG GTACACTCAA GGGATCCCAG AATCATGGAG CAGGCCAGCC
  TGGCCCTGTG CTCCTGACCA CACAGCTAGA TTCAGGTACC CTCCCCTGGC CTCAGCACCT
  CTTTCCTGAG AAAAGGGGGA CTCACCTGCC AGCGACTTCG AGCAAGAAGG AACTTGAGCT
  GTTTGGTGTT GATGAAGTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383534438	MGP_WTSI_11_58814810	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252639599					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383534438	MGP_WTSI_11_58814810	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58892134 () rs orientation: forward

Symbol	Name	Function Class
Gm10435	predicted gene 10435	1602 bp upstream
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	within coordinates
Rr448071	regulatory region 448071	1112 bp proximal
Tssr101781	transcription start site region 101781	1938 bp downstream
Tssr101782	transcription start site region 101782	1612 bp upstream
Tssr101783	transcription start site region 101783	1649 bp upstream
Tssr101784	transcription start site region 101784	1666 bp upstream
Tssr108188	transcription start site region 108188	1901 bp upstream
Tssr108189	transcription start site region 108189	874 bp downstream
Tssr108190	transcription start site region 108190	890 bp downstream
Tssr108191	transcription start site region 108191	1047 bp downstream
Tssr108192	transcription start site region 108192	1066 bp downstream
Tssr108193	transcription start site region 108193	1083 bp downstream
Tssr108194	transcription start site region 108194	1113 bp downstream