rs252640173 SNP Detail

Summary

• ID
  rs252640173
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165428306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATCACTG GAAAGAGAGG
  CCCATTGGAC TTGCAAACTT TATATGCCCC AGTACAGGGG AACACCAGGG CCAAAAAGGG
  GGAGTGGGTG GGCAGGGGAG TGGGGGTGGG TGGATATGGG GGACTTTTGG TATAGCATTG
  GAAATGTAAA TGAGCTAAAT ACCTAATAAA AAATGGAAAA AAAAAACACG TCTTTTTTTA
  R
  ATTATTATAT TATTTTGTTT CTATGTGTTT GAGTATTTTT CTGCATGTAT ATATATATAC
  ATATATATAT ATATATGTGT GTGTGTGTAT GTGTGTATGT GTATATATAT ATATATATAT
  ATATATATAT ATATATATAT ATATACACAC ACATTCATCA TGTTTGTGCC TAGAGACTGT
  GGAAGTCAGG AGAGGGTACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	FVB/NJ	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ
ss352244944	MGP_WTSI_1_167530868	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	FVB/NJ	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ
rs252640173					SNP	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352244944	MGP_WTSI_1_167530868	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165428306 () rs orientation: forward

Symbol	Name	Function Class
Mpzl1	myelin protein zero-like 1	within coordinates
Tssr14771	transcription start site region 14771	1220 bp downstream