rs252646549 SNP Detail

Summary

• ID
  rs252646549
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144940551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGATCTCT AGTATTCATG
  TAAATGTCGG GCAGGTATGG CAGCCTGCCT GTAACCTGAG CACTCCATAG GCAGACAGAG
  ATCCCTGAAG CAAGTTAGAC TAGAAAATGT GCAAGCTCTG GGTACAGATG AGAGCCCTGC
  CTCAGTAACT GAGAGTGATC AAACACACCC AAAGCCAACC TCTGGCCTCC ACACACTGGC
  W
  CACACATACA TGCAAACATG GACACACACA CACACACACA CACACACACA CACACACACA
  CACTGAAGGA GGGAGATTCT GGACTGCCCA TCCTTTAGGA ATGTGTTATA GGTCAGCACT
  CAAATTGTTC CCTGCTCCCC CTCCTCTGAT TGCAGAGCCC TAAGCTGGTC TAAGCTAGTA
  CAGCCATTGT TCACATCCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363595755	MGP_WTSI_4_144803884	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252646549					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363595755	MGP_WTSI_4_144803884	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144940551 () rs orientation: forward

Symbol	Name	Function Class
Rr87265	regulatory region 87265	250 bp proximal
Rr103536	regulatory region 103536	752 bp distal
Rr103537	regulatory region 103537	within coordinates
Tnfrsf1b	tumor necrosis factor receptor superfamily, member 1b	within coordinates
Tssr40194	transcription start site region 40194	11 bp downstream
Tssr40195	transcription start site region 40195	300 bp upstream
Tssr44484	transcription start site region 44484	1196 bp upstream
Tssr44485	transcription start site region 44485	1130 bp upstream
Tssr44486	transcription start site region 44486	308 bp upstream
Tssr44487	transcription start site region 44487	253 bp upstream
Tssr44488	transcription start site region 44488	136 bp upstream
Tssr44489	transcription start site region 44489	60 bp upstream
Tssr44490	transcription start site region 44490	217 bp downstream
Tssr44491	transcription start site region 44491	384 bp downstream
Tssr44492	transcription start site region 44492	609 bp downstream
Tssr44493	transcription start site region 44493	770 bp downstream
Tssr44494	transcription start site region 44494	1004 bp downstream
Tssr44495	transcription start site region 44495	1065 bp downstream
Tssr44496	transcription start site region 44496	1134 bp downstream
Tssr44497	transcription start site region 44497	1257 bp downstream
Tssr44498	transcription start site region 44498	1382 bp downstream
Tssr44499	transcription start site region 44499	1425 bp downstream
Tssr44500	transcription start site region 44500	1513 bp downstream
Tssr44501	transcription start site region 44501	1573 bp downstream
Tssr44502	transcription start site region 44502	1669 bp downstream
Tssr44503	transcription start site region 44503	1785 bp downstream
Tssr44504	transcription start site region 44504	1851 bp downstream