rs252646685 SNP Detail

Summary

• ID
  rs252646685
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56326748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCCAAAT TATGATAATC
  ACCAGGCCAC GATCAGAATT TATGTATTTT GTTTCTGTGT GTAAATTGGA AAATCTCTCC
  CCAGCAAGAT TGTCTTAATG CTGTCTCCAA AGAATTTTAA ACACCTTGTT AAAATTCTCT
  GCAAGATTAC ATACTTTGTT ATGTGACTTG TGAATTGCCC ACCCTTGCAC CCAAGTCAAG
  Y
  TTGTCCTTAA CTGAGTGAAG TAGTGTAGGC TCTACCTAGA CACGGAACAG GAGCTCCTTA
  GCCGCTCTTT TAAGGAGGTA GTTTATAAGT TAGAGTACCG AATAGTTCAC ACAAATTACA
  GGGCATTTTC ATGTTTGCAG AGGGAGAGAG TGTCATGCTG CAGTACTCCG ATTTGATGTT
  ACCGTAATAA AGGGCACTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377668721	MGP_WTSI_9_56267271	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252646685					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377668721	MGP_WTSI_9_56267271	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56326748 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21795	CpG island 21795	632 bp distal
Hmg20a	high mobility group 20A	within coordinates
Peak1	pseudopodium-enriched atypical kinase 1	1397 bp upstream
Rr206471	regulatory region 206471	within coordinates
Rr368756	regulatory region 368756	781 bp downstream
Rr368757	regulatory region 368757	264 bp downstream
Rr401386	regulatory region 401386	1152 bp downstream
Tssr85252	transcription start site region 85252	1065 bp downstream
Tssr85253	transcription start site region 85253	1039 bp downstream
Tssr85254	transcription start site region 85254	783 bp downstream
Tssr85255	transcription start site region 85255	755 bp downstream
Tssr85256	transcription start site region 85256	617 bp downstream
Tssr85257	transcription start site region 85257	590 bp downstream
Tssr85258	transcription start site region 85258	21 bp upstream
Tssr89707	transcription start site region 89707	1412 bp upstream
Tssr89708	transcription start site region 89708	1383 bp upstream
Tssr89709	transcription start site region 89709	1354 bp upstream
Tssr89710	transcription start site region 89710	618 bp upstream
Tssr89711	transcription start site region 89711	501 bp upstream