rs252646881 SNP Detail

Summary

• ID
  rs252646881
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:80073707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGATTTGT TCATTTATTT
  TATGTATATG AGTACACTGT AGCTGTCTTC AGACATACCA GATCCCATTA CAGATGGTTG
  TGAGCCACCA TGTGGTTGCT GAGTACTGAA TTCAGGACCT CTGGAAGAGT AGTTGGTTAT
  TTTTTTTTTA AAGATTTATT TATTTATTAT ATGTAAGTAA ACTGCAGCTA TCTTCAGACA
  Y
  ACCAGAAGAA GGCATCAGAT CCCATTATGG ATGGTTGTGA GCCACCCTGT GGTTGCTGGG
  CATTGAACTC GGGACTTTGG AAGAGCAATC AGTGCTCTTA ACTGCTGAGC CATCTCTCCA
  GCCCTGATTT ACTTATTTTT TTTTCTTTTT CCATTTTTTT TTTTTTTTGG TTTTGTTTTG
  TTTTGTTTTT CGAGACAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323761723	CHEV_11_79996383	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252646881					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:80073707 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3379	CpG island 3379	880 bp proximal
D11Bhm113	DNA segment, Chr 11, Boehm 113	1808 bp distal
Rnf135	ring finger protein 135	970 bp upstream
Rr386348	regulatory region 386348	1062 bp downstream
Rr402781	regulatory region 402781	834 bp upstream
Rr452449	regulatory region 452449	1297 bp distal
Rr452450	regulatory region 452450	480 bp proximal
Rr452451	regulatory region 452451	487 bp proximal
Rr452452	regulatory region 452452	674 bp proximal
Tssr3599	transcription start site region 3599	1026 bp upstream
Tssr103509	transcription start site region 103509	980 bp upstream
Tssr103510	transcription start site region 103510	1005 bp upstream