rs252655155 SNP Detail

Summary

• ID
  rs252655155
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:120239305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCCCCAG CCGCGGCTGC
  AGACCCAGGC CCACCCGTCA GGCGCCCTGC GCTCCGCTCC GCTCCGCAGC GGTGCGGCAG
  GCAGGGTGAG CGGGAAGAAA GGGCCACAGG AAGTCACTGG GCCAAGCCCG GGGAGCGGCA
  GCTTACCGGC GAAGGACGCG GCGGCGACGG AGGAGCGGCA AGAAGCGCAG TGTAAGCCGG
  Y
  GGCGGAGTGT GAGACCGACC GCGGCCTCCC CCGCCGCTAT TTAAGCGGGA GCGGGCCGCG
  CGCGCGGGCG GGGGCGCGCG CGGCCCCAGA ACATGTCCAT ATATGGCGAT CTTTCCAAAA
  GCCGGGCGCC TATTGGCCCG CCCGCCAGGG ACACGTGGGG CCCGGGCCCG CCCGCCCCTG
  GCCCGCGCCG CCGCCAACGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384941863	MGP_WTSI_11_120209793	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252655155					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384941863	MGP_WTSI_11_120209793	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120239305 () rs orientation: forward

Symbol	Name	Function Class
0610009L18Rik	RIKEN cDNA 0610009L18 gene	199 bp upstream
Actg1	actin, gamma, cytoplasmic 1	within coordinates
Cpgi4301	CpG island 4301	within coordinates
Gm55891	predicted gene, 55891	1660 bp upstream
Gm72337	predicted gene, 72337	322 bp downstream
Mir6935	microRNA 6935	1066 bp upstream
Tssr3756	transcription start site region 3756	799 bp upstream
Tssr3757	transcription start site region 3757	1792 bp upstream
Tssr106280	transcription start site region 106280	203 bp upstream
Tssr112287	transcription start site region 112287	1020 bp upstream
Tssr112288	transcription start site region 112288	290 bp upstream
Tssr112289	transcription start site region 112289	234 bp upstream
Tssr112290	transcription start site region 112290	16 bp downstream
Tssr112291	transcription start site region 112291	34 bp downstream
Tssr112292	transcription start site region 112292	272 bp downstream
Tssr112293	transcription start site region 112293	935 bp downstream
Tssr112294	transcription start site region 112294	1365 bp downstream