rs252656874 SNP Detail

Summary

• ID
  rs252656874
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96140006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCAAAAA TGTATTTGGT
  GGCTCAGTCC TTTCACTGCA ACACTTAGGA GGCTGTGATA GGATTTCTGC ATGTTGTAGT
  GCAGCCTGGG CTACAAAGGA GCCTGTCCCA AGCAATATAC AAGGTCAGTT ATATTTGAAC
  TTTAATATTA TTTGAACTGT CCAGCTCTGG GTAGAGAGAA GCAAGCAAGG AAGCAAGAAA
  M
  CCTTTTCAGA GGGGGATTCT TCCAGTGTAG GTGATGCGTA TGTGATAAGA GACAGACAGA
  CACCTTAGTT ATGTTGGATT GTGGAACTCA CTGGCAGCGG AAACATGACA TGCCAGTAAG
  TCCAGTGGAG ACAGGGATTT AATTTTGACT TTTGAATGTT TTCACTACTA CTGTATACCC
  AGGCTCTAAA ATAGCACTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323107358	CHEV_9_96158372	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252656874					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96140006 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	1267 bp upstream
Tssr86589	transcription start site region 86589	744 bp upstream
Tssr86590	transcription start site region 86590	761 bp upstream
Tssr86591	transcription start site region 86591	775 bp upstream
Tssr86592	transcription start site region 86592	838 bp upstream
Tssr86593	transcription start site region 86593	853 bp upstream
Tssr86594	transcription start site region 86594	1055 bp upstream
Tssr86595	transcription start site region 86595	1293 bp upstream
Tssr86596	transcription start site region 86596	1317 bp upstream