rs252661575 SNP Detail

Summary

• ID
  rs252661575
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165483384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGGGCTTC CGCACCCATT
  CTCAGCCTCT GGGCTGCCGG TTTGCGATGG CGCCTGGACC TCTGGATGAC CCTGACTAGC
  TGTGTCTGGA TTCTGTCCAA CCTTCTCTCC AGCATTCGCC TCCTCTGGGG TCCTGACCAG
  CTCCTCTGGC TTCTCTGTGC TGTTACACGT GTTCCTTCTC CGTGGCTTTT CTGCAGACCA
  Y
  GGAGTTCCCT CCACCCCGTC TGCCATAGCC TCCTGGTTGA GTTGAGGGGA CCCGGGGTCC
  TTGCTCTTGC TAGCAAACAC GTCATCCCCA TTCTCTTCCC TGGCACCGTT TTCCTGAGAT
  GGCTCCACAG CCCTGTAATC TCTAAAATCC CCACAGTCCG ACTGAGACCT TCGGAATCGC
  CGCGAGGGAG GACGTCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320087016	CHEV_1_167585946	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252661575					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165483384 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Rr372388	regulatory region 372388	517 bp upstream
Rr422410	regulatory region 422410	1755 bp distal
Rr422411	regulatory region 422411	1998 bp distal
Rr422412	regulatory region 422412	406 bp distal
Tssr9810	transcription start site region 9810	1929 bp downstream
Tssr9811	transcription start site region 9811	529 bp downstream
Tssr9812	transcription start site region 9812	276 bp downstream