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rs252669489 SNP Detail
Summary
  • ID
    rs252669489
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44126887 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CTTTT CACCTCCTTT CTCCATCTTC
Y
CTTGCTCCCT ATTTTTTCTA TCCTT                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss641461995 FVB_NJ_7_51732833 EVA_MGPV3 EVA_MGPV3 f SNP T T C T C C C T T T C C C C C C T T T C T T T T T T C C T T T T T C C T T T C T T C C T C T C T C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252669489 SNP T T C T C C C T T T C C C C C C T T T C T T T T T T C C T T T T T C C T T T C T T C C T C T C T C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss641461995 FVB_NJ_7_51732833 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44126887 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr646102 regulatory region 646102 1804 bp distal
Tssr2222 transcription start site region 2222 1109 bp downstream
Tssr2223 transcription start site region 2223 930 bp downstream
Tssr2224 transcription start site region 2224 84 bp downstream
Tssr2225 transcription start site region 2225 44 bp downstream
Tssr2226 transcription start site region 2226 475 bp upstream
Tssr2227 transcription start site region 2227 1548 bp upstream
Tssr66190 transcription start site region 66190 1978 bp downstream
Tssr66191 transcription start site region 66191 1939 bp downstream
Tssr66192 transcription start site region 66192 1924 bp downstream
Tssr66193 transcription start site region 66193 1852 bp downstream
Tssr66194 transcription start site region 66194 1760 bp downstream
Tssr66195 transcription start site region 66195 1709 bp downstream
Tssr66196 transcription start site region 66196 1676 bp downstream
Tssr66197 transcription start site region 66197 1531 bp downstream
Tssr66198 transcription start site region 66198 1500 bp downstream
Tssr66199 transcription start site region 66199 1490 bp downstream
Tssr66200 transcription start site region 66200 1467 bp downstream
Tssr66201 transcription start site region 66201 1449 bp downstream
Tssr66202 transcription start site region 66202 1434 bp downstream
Tssr66203 transcription start site region 66203 1412 bp downstream
Tssr66204 transcription start site region 66204 1356 bp downstream
Tssr66205 transcription start site region 66205 1332 bp downstream
Tssr66206 transcription start site region 66206 1319 bp downstream
Tssr66207 transcription start site region 66207 1299 bp downstream
Tssr66208 transcription start site region 66208 1285 bp downstream
Tssr66209 transcription start site region 66209 1254 bp downstream
Tssr66210 transcription start site region 66210 1221 bp downstream
Tssr66211 transcription start site region 66211 1181 bp downstream
Tssr66212 transcription start site region 66212 1138 bp downstream
Tssr66213 transcription start site region 66213 1123 bp downstream
Tssr66214 transcription start site region 66214 1091 bp downstream
Tssr66215 transcription start site region 66215 1061 bp downstream
Tssr66216 transcription start site region 66216 1014 bp downstream
Tssr66217 transcription start site region 66217 942 bp downstream
Tssr66218 transcription start site region 66218 888 bp downstream
Tssr66219 transcription start site region 66219 846 bp downstream
Tssr66220 transcription start site region 66220 812 bp downstream
Tssr66221 transcription start site region 66221 793 bp downstream
Tssr66222 transcription start site region 66222 740 bp downstream
Tssr66223 transcription start site region 66223 673 bp downstream
Tssr66224 transcription start site region 66224 650 bp downstream
Tssr66225 transcription start site region 66225 630 bp downstream
Tssr66226 transcription start site region 66226 617 bp downstream
Tssr66227 transcription start site region 66227 576 bp downstream
Tssr66228 transcription start site region 66228 573 bp downstream
Tssr66229 transcription start site region 66229 560 bp downstream
Tssr66230 transcription start site region 66230 540 bp downstream
Tssr66231 transcription start site region 66231 505 bp downstream
Tssr66232 transcription start site region 66232 493 bp downstream
Tssr66233 transcription start site region 66233 471 bp downstream
Tssr66234 transcription start site region 66234 441 bp downstream
Tssr66235 transcription start site region 66235 421 bp downstream
Tssr66236 transcription start site region 66236 394 bp downstream
Tssr66237 transcription start site region 66237 373 bp downstream
Tssr66238 transcription start site region 66238 354 bp downstream
Tssr66239 transcription start site region 66239 303 bp downstream
Tssr66240 transcription start site region 66240 222 bp downstream
Tssr66241 transcription start site region 66241 210 bp downstream
Tssr66242 transcription start site region 66242 130 bp downstream
Tssr66243 transcription start site region 66243 116 bp downstream
Tssr66244 transcription start site region 66244 65 bp downstream
Tssr66245 transcription start site region 66245 3 bp downstream
Tssr66246 transcription start site region 66246 14 bp upstream
Tssr66247 transcription start site region 66247 61 bp upstream
Tssr66248 transcription start site region 66248 91 bp upstream
Tssr66249 transcription start site region 66249 115 bp upstream
Tssr66250 transcription start site region 66250 146 bp upstream
Tssr66251 transcription start site region 66251 156 bp upstream
Tssr66252 transcription start site region 66252 190 bp upstream
Tssr66253 transcription start site region 66253 213 bp upstream
Tssr66254 transcription start site region 66254 243 bp upstream
Tssr66255 transcription start site region 66255 303 bp upstream
Tssr66256 transcription start site region 66256 331 bp upstream
Tssr66257 transcription start site region 66257 367 bp upstream
Tssr66258 transcription start site region 66258 397 bp upstream
Tssr66259 transcription start site region 66259 426 bp upstream
Tssr66260 transcription start site region 66260 542 bp upstream
Tssr66261 transcription start site region 66261 568 bp upstream
Tssr66262 transcription start site region 66262 585 bp upstream
Tssr66263 transcription start site region 66263 591 bp upstream
Tssr66264 transcription start site region 66264 601 bp upstream
Tssr66265 transcription start site region 66265 630 bp upstream
Tssr66266 transcription start site region 66266 673 bp upstream
Tssr66267 transcription start site region 66267 701 bp upstream
Tssr66268 transcription start site region 66268 730 bp upstream
Tssr66269 transcription start site region 66269 750 bp upstream
Tssr66270 transcription start site region 66270 801 bp upstream
Tssr66271 transcription start site region 66271 819 bp upstream
Tssr66272 transcription start site region 66272 885 bp upstream
Tssr66273 transcription start site region 66273 897 bp upstream
Tssr66274 transcription start site region 66274 912 bp upstream
Tssr66275 transcription start site region 66275 920 bp upstream
Tssr66276 transcription start site region 66276 949 bp upstream
Tssr66277 transcription start site region 66277 957 bp upstream
Tssr66278 transcription start site region 66278 989 bp upstream
Tssr66279 transcription start site region 66279 1036 bp upstream
Tssr66280 transcription start site region 66280 1075 bp upstream
Tssr66281 transcription start site region 66281 1106 bp upstream
Tssr66282 transcription start site region 66282 1132 bp upstream
Tssr66283 transcription start site region 66283 1146 bp upstream
Tssr66284 transcription start site region 66284 1163 bp upstream
Tssr66285 transcription start site region 66285 1178 bp upstream
Tssr66286 transcription start site region 66286 1215 bp upstream
Tssr66287 transcription start site region 66287 1233 bp upstream
Tssr66288 transcription start site region 66288 1269 bp upstream
Tssr66289 transcription start site region 66289 1317 bp upstream
Tssr66290 transcription start site region 66290 1378 bp upstream
Tssr66291 transcription start site region 66291 1407 bp upstream
Tssr66292 transcription start site region 66292 1445 bp upstream
Tssr66293 transcription start site region 66293 1463 bp upstream
Tssr66294 transcription start site region 66294 1484 bp upstream
Tssr66295 transcription start site region 66295 1769 bp upstream
Tssr66296 transcription start site region 66296 1902 bp upstream
Tssr66297 transcription start site region 66297 1945 bp upstream
Tssr66298 transcription start site region 66298 1970 bp upstream
Tssr72198 transcription start site region 72198 1679 bp upstream
Tssr72199 transcription start site region 72199 12 bp downstream
Tssr72200 transcription start site region 72200 966 bp downstream
Tssr72201 transcription start site region 72201 1467 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory