rs252669629 SNP Detail

Summary

• ID
  rs252669629
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29778093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCAAATCA ACTTGTCTCA
  GCCTCCTGAT AGAATTCTGA GATTATAGCT ATGTACCATC GTGTTTACAA AGGAGACACT
  TTACAGACAT GTTTGAGCTG CACCTTGAAG CAGGTTGTTT ATCTTAGGCA GCAAGAAGCA
  CACATACATC TGAAGGCAGA CCAGAAGGGC AGCTAAGGGT GGGAAAGTGT GTAGATATTA
  W
  GGGAATTTCA TTTGGTAGAT TTTTTCTCTA TGAAATAGGG AACTTGATGT ATGGAATGCA
  GAAGAGACAA AAGTTTGGAA AAGCCTCTGT TGGTAATTGT CTAGAGAGAA CTGCTGGACA
  GAGTGGAGAC AATGATTCGT GGAGATTATA ACACGCACGT GTTACTGAAA ATTGAATCTA
  GGATTTTGCT CAGGTCAGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353505605	MGP_WTSI_2_29743601	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252669629					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353505605	MGP_WTSI_2_29743601	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29778093 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11418	CpG island 11418	907 bp proximal
Gm75149	predicted gene, 75149	within coordinates
Odf2	outer dense fiber of sperm tails 2	1140 bp upstream
Rr396853	regulatory region 396853	1494 bp upstream
Rr554171	regulatory region 554171	1145 bp distal
Rr554172	regulatory region 554172	940 bp distal
Rr554173	regulatory region 554173	1149 bp proximal
Tssr452	transcription start site region 452	1628 bp upstream
Tssr453	transcription start site region 453	1907 bp upstream
Tssr454	transcription start site region 454	1924 bp upstream
Tssr455	transcription start site region 455	1957 bp upstream
Tssr17034	transcription start site region 17034	1118 bp upstream
Tssr17035	transcription start site region 17035	1136 bp upstream
Tssr17036	transcription start site region 17036	1661 bp upstream
Tssr17037	transcription start site region 17037	1721 bp upstream
Tssr17038	transcription start site region 17038	1985 bp upstream