rs252675004 SNP Detail

Summary

• ID
  rs252675004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91036195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGGAGGAG CAAAAGTGCT TCTACACACA
  AAGAGATTTG TGTTGCCAAT CTACAGGTTT ATGTGCGAAG CACAGACTTC GATCGTACTC
  TCATGAGTGC TGAGGCCAAC CTGGCTGGAC TCTTCCCTCC CAATGAAGTT CAGCACTTCA
  R
  CCCTAACATT TCATGGCAGC CTATCCCTGT TCACACTGTG CCCATCACTG AAGACAGGGT
  AAGACTGGCC AGCCCTTCTT AAGTGGTGAG GGAACAACTA TGGTTATAAG CCTATTGATC
  CCAGACTCCT TCTCTGCCTG TTTCCTCCTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320391970	CHEV_2_91046007	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252675004					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91036195 () rs orientation: forward

Symbol	Name	Function Class
Acp2	acid phosphatase 2, lysosomal	within coordinates
D11Hjk15	DNA segment, Chr 11, H. Jockusch 15	1755 bp proximal
Tssr18872	transcription start site region 18872	21 bp downstream
Tssr18873	transcription start site region 18873	175 bp upstream
Tssr18874	transcription start site region 18874	607 bp upstream
Tssr18875	transcription start site region 18875	659 bp upstream
Tssr18876	transcription start site region 18876	683 bp upstream
Tssr18877	transcription start site region 18877	929 bp upstream
Tssr18878	transcription start site region 18878	1960 bp upstream