rs252679227 SNP Detail

Summary

• ID
  rs252679227
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:109740716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTCACAAG GTAGATGGAA GTAGGACATA
  ATATTAAAAT TGAAATGAAA CTAGAGAAGC AGCCTAGAAA TGTTGAATCT AAGGAGAAAC
  TGTGGCCAAT GTACGGTGCC TAAAATTAGC CCAGCTTAAG CTGAAGAGCT CTGAATTTTA
  W
  CTCAGAGTCA TGAGCACTAA ATGCCAAGAC AGTGCAAATA TACTATTTAA AATACTTCTG
  Tgctggagag accaccccag cgtcaagagc atttactact actcttgcat agacccagat
  taccttctca gcaccaacat ggcagctcac                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323458415	CHEV_10_109341911	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252679227					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:109740716 () rs orientation: forward

Symbol	Name	Function Class
Nav3	neuron navigator 3	within coordinates
Rr212647	regulatory region 212647	85 bp proximal
Rr224236	regulatory region 224236	915 bp distal
Rr225672	regulatory region 225672	886 bp proximal
Tssr99236	transcription start site region 99236	1026 bp upstream
Tssr99237	transcription start site region 99237	1010 bp upstream
Tssr99238	transcription start site region 99238	984 bp upstream
Tssr99239	transcription start site region 99239	955 bp upstream
Tssr99240	transcription start site region 99240	928 bp upstream
Tssr99241	transcription start site region 99241	889 bp upstream
Tssr99242	transcription start site region 99242	833 bp upstream