rs252681942 SNP Detail

Summary

• ID
  rs252681942
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148490868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGGCCAC TGAGAGTTCA
  GACGTGAGCT ATGCAGTCCC TGTTGTCTAG GAGCCTGCGT CATTCCCCAG AACCATCTCC
  CCAGTCACGT GTTCCCTCAT CGGACGGGAA CTCACGGGAC ACTTCAGAGG ACCTACTTGT
  CTCTTGAGTG GCGGCCTGGC TGAAGGCATT CCATACACTC CTAGGAGCCT ACATCACAGA
  Y
  CCAACTCCCT AAGAATCCAA ACGTAGAGGA AAACAGAGGC CCAGGCTCAC CCCAATGTGG
  CTTCCCTATT TCAGCATCTG TGGGTTCCAT GGTTTTCTAC TCTTAATGTA GTTTCTCTCC
  GTGTGTGTTT AATAAGCACA GAACCCTTCC CCACCATGAA CCCTTCTGGA AATCCAAACA
  ACTGAAGCTT TTCAGTCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367131353	MGP_WTSI_5_149365634	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252681942					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367131353	MGP_WTSI_5_149365634	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148490868 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	197 bp upstream
Cpgi17076	CpG island 17076	911 bp distal
Gm72666	predicted gene, 72666	within coordinates
Gm72684	predicted gene, 72684	133 bp upstream
Rr378792	regulatory region 378792	within coordinates
Rr625194	regulatory region 625194	1407 bp distal
Rr625195	regulatory region 625195	779 bp distal
Rr625196	regulatory region 625196	1241 bp distal
Rr625197	regulatory region 625197	207 bp distal
Rr625198	regulatory region 625198	within coordinates
Rr625199	regulatory region 625199	136 bp proximal
Tssr49862	transcription start site region 49862	1665 bp downstream
Tssr54571	transcription start site region 54571	1935 bp upstream
Tssr54572	transcription start site region 54572	1837 bp upstream
Tssr54573	transcription start site region 54573	1785 bp upstream
Tssr54574	transcription start site region 54574	1630 bp upstream
Tssr54575	transcription start site region 54575	1541 bp upstream
Tssr54576	transcription start site region 54576	1370 bp upstream
Tssr54577	transcription start site region 54577	1215 bp upstream
Tssr54578	transcription start site region 54578	177 bp upstream
Tssr54579	transcription start site region 54579	33 bp upstream
Ubl3	ubiquitin-like 3	1269 bp upstream