rs252689038 SNP Detail

Summary

• ID
  rs252689038
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30208617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCAGCTC CTGTTCCCAT
  ACTTGGGCAC CGTCCACCAG AGGCATGGAG CATCCTGCCT CTTGGTCCGC AGCAGAGAGT
  AGCACCTCAT TTGGGTCGGT AATGTGCCCC AGATACGTGG CCCTAATACA CTTCAATGGG
  AACAGTAAGG ATGCTGATCC TGCTTTCCAA CCGCAGTGGT GAAGGGCTGG ATGGCAACCA
  M
  GAAATTCTTT TTACCAGGTA ATGTGGACAT CACAGTAAAT GACGATGAGC CACAGCTGTG
  GCTTCCCAGC TCCTGCTCCC CATTGGGTTT CAGCCCTCCG TGTGTTCCCT AGCTCACTTG
  TGTTGGAGTA CGTAAGTAGT CTAGGATTGA GGAAGTCTGG GTAGAACTGA AAAAACCCTG
  CACACACTCC TGACAGCTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395814144	MGP_WTSI_16_30389885	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252689038					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395814144	MGP_WTSI_16_30389885	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30208617 () rs orientation: forward

Symbol	Name	Function Class
Atp13a3	ATPase type 13A3	943 bp upstream
Cpgi8159	CpG island 8159	272 bp distal
Gm61087	predicted gene, 61087	within coordinates
Gm61089	predicted gene, 61089	91 bp upstream
Rr370076	regulatory region 370076	269 bp downstream
Rr514223	regulatory region 514223	1280 bp distal
Rr514224	regulatory region 514224	910 bp distal
Rr514225	regulatory region 514225	901 bp distal
Rr514226	regulatory region 514226	102 bp distal
Rr514227	regulatory region 514227	within coordinates
Tssr140714	transcription start site region 140714	1098 bp upstream
Tssr140715	transcription start site region 140715	997 bp upstream
Tssr140716	transcription start site region 140716	941 bp upstream
Tssr140717	transcription start site region 140717	451 bp upstream