rs252690519 SNP Detail

Summary

• ID
  rs252690519
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42067825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAGTTAC AACAAAAACA
  AAAAAGCTGG GCGGTGGTGG TGCATGCTTT TAATCCTAGC CCTCAGGAGG GCAAAGGCTA
  GCAGATCTGT GAGTTCAAGG CCAGTCTGGA CTACAGAGCA AGTTTCAGGA CAGCCAGGGG
  GACACAGAAA CCCTGTCTCA AAAAACCAAA TGTATGTGTA TGTCTGTGTG TGTGTGGGAG
  K
  GGGTGCATGC ACGTGCATGC TTGTGTGTGT GTGTGTGTCT GTGTGTGTGT GTGTGTATGT
  GTGTGTGTGT GTTGGTGGGG GGTGTGTGTG CACATGAGAG CAGGTACCTG CAGAGACCAA
  AAAAGGGCCA GATCTCCTGG AGCTGGAGCT GCTTTCGAGC TGCTCACTCT GGGTTCCAGG
  GAATGACCTT GGGTCCTATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377357965	MGP_WTSI_9_41964612	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	T	G	G	G	T	T	T	T	T	T	T	G	G	G	T	G	G	G	T	G	G	G	G	G	T	G	G	G	T	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252690519					SNP	G	G	G	G	T	G	G	G	T	T	T	T	T	T	T	G	G	G	T	G	G	G	T	G	G	G	G	G	T	G	G	G	T	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377357965	MGP_WTSI_9_41964612	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T