rs252693371 SNP Detail

Summary

• ID
  rs252693371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138105194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTTCTTC TATCACTCTA
  TACATGTTTT TGAGTTAGGG TATCTCACTG AAGCTGTGCT CAGCATTTAG GGTAGACTGT
  GTGATCAATG AAGCCCTGTC TCTGAGTCCC CAGGATTGGG GTTACACACA TGCATAGTCA
  CTTTTACAAT GGGTTCTGGA GTTCCAAACT CAGGTTCTCA TGCCTGTACA GGCAAGCACT
  Y
  TTCCCATTCA GCCATCTCTG CAGCACCCTG CAGATACATT TTTGATGCTT AAAACTTTGT
  TTTCCTCTTA CTTTGATTTC AAGGAGCTGC AGGGTCAAAC TTGCACATCC CCCTTTCTGT
  ACATGGAAAT AACCTTACAA CTTAAATTCC AGGTAATAAA ATTCTAAAGC CTCAAGGAAT
  CATATTATTT CATATTTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351608904	MGP_WTSI_1_140074033	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252693371					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351608904	MGP_WTSI_1_140074033	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138105194 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	1748 bp upstream
Rr372118	regulatory region 372118	1949 bp upstream
Rr396335	regulatory region 396335	1928 bp downstream
Rr396336	regulatory region 396336	968 bp downstream
Rr419678	regulatory region 419678	1660 bp distal
Tssr233	transcription start site region 233	1831 bp upstream
Tssr9154	transcription start site region 9154	1819 bp downstream
Tssr9155	transcription start site region 9155	1756 bp downstream
Tssr14024	transcription start site region 14024	1812 bp upstream
Tssr14025	transcription start site region 14025	1796 bp upstream
Tssr14026	transcription start site region 14026	1768 bp upstream
Tssr14027	transcription start site region 14027	1752 bp upstream
Tssr14028	transcription start site region 14028	1716 bp upstream
Tssr14029	transcription start site region 14029	1692 bp upstream
Tssr14030	transcription start site region 14030	1544 bp upstream
Tssr14031	transcription start site region 14031	1520 bp upstream