rs252705189 SNP Detail

Summary

• ID
  rs252705189
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:140090130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTATAACT CCATGGTAAC AACCACTTTC
  CAGCTTAAGA GTACAGTCAG TGTCCTATAG GCTTGTTAAA ATAGCACCAG AAATATAACA
  TTTTCATTAT TATGTTAGAT TCTCtaaaaa ataattattc aattataaat gattatttat
  W
  GTCTGTATTA ATAGTTGGTT TTGTTAGATG GGGGGAGGTC ACTCAAAAGA CATATTAAGC
  TAAGAAGATA AATTTCTCTA GCAATAAAAT TCTCAGGAGG CAACTGTTTC CAAAGCTAGT
  TTGACCCCGT GACCTCAGAC ACAACTTCAT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320528552	CHEV_2_140073946	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252705189					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:140090130 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr566094	regulatory region 566094			1711 bp proximal
Sel1l2	sel-1 suppressor of lin-12-like 2 (C. elegans)			Intron
				Noncoding-Transcript-Variant