rs252708778 SNP Detail

Summary

• ID
  rs252708778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134022797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACTCCAT GGAATGGGGG
  GGAACACCTT CAAATTGGAG CCCCTGTGGT AGGAGATTAA AGTTGGTAAA GGGACTCTGC
  AAACAGCCCT GGCCTCTCCA TTTTAAATCT CCCTTTTCAT CCCCAGCCGC TCCTGTAGCT
  GGGGCTGTCT CACACTCTGT TCATAGCTTT GTTGATAGCT TTCCCTTTCC CACCAAGTTC
  Y
  GGAAGCTGAT ACTGCCTCCC TCGGTGAGCA TTCACCAGGT AGGATGCCTT AATACAGGGC
  AGCTCGTCAA GCCCAGGGCA GGGCACCCAG TATGAGCCCC CATCAGAGTC AGTTTCTTTT
  TGTCTATCAG CAAACCCAAG TGGCAAAGGC AGAAGGAAGT GACCCCAAAG AATTTGGGGA
  AGTAAACTCT GTCCCTCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351511005	MGP_WTSI_1_135991636	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252708778					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351511005	MGP_WTSI_1_135991636	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134022797 () rs orientation: forward

Symbol	Name	Function Class
Cpgi761	CpG island 761	1498 bp distal
Gm32039	predicted gene, 32039	within coordinates
Gm38140	predicted gene, 38140	1346 bp downstream
Gm70605	predicted gene, 70605	within coordinates
Rr366718	regulatory region 366718	1843 bp downstream
Rr396310	regulatory region 396310	1514 bp downstream
Rr396311	regulatory region 396311	834 bp downstream
Rr418808	regulatory region 418808	1930 bp distal
Rr418809	regulatory region 418809	416 bp distal
Rr418810	regulatory region 418810	1384 bp distal
Tssr8854	transcription start site region 8854	1755 bp downstream
Tssr13771	transcription start site region 13771	1132 bp upstream