rs252710570 SNP Detail

Summary

• ID
  rs252710570
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18913115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCCGGAA CCCTCCTCTT
  CGGCCCATCT CCGCGCATCC TCATCGGCCC CAGGTTGCAG GAAAAGCAGA GAGTGGGGCT
  GGTCCCGGAC AGACCCCGAA AAGCCAGAGA GACTCTCCTG GTCTTTGGAG CGCTCCCCCG
  CACCCCTCCC GTCCCGTCCC GTCCCGTCCC GTCCCTCCCC CCCCCCCCCC CCCCCACCTC
  S
  TGGTCCCCTG CAGCCCGCAT CTCCTTGGCT TTCTAGATGA TAATCTGTCC GGCACCAGTG
  GCATGGAGGT GGACGACCGC GTGTCGGCGC TGGAGCAGCG GCTGCAGCTG CAAGAAGATG
  AACTGGCGGT CCTAAAGGCG GCGCTGGCGG ACGCGCTGCG TCGCCTGCGG GCATGCGAAG
  AGCAAGGCGC GGCGCTGCGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss370743479	MGP_WTSI_7_19764539	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	G	G	C	G	C	C	C	G	C	C	G	C	C	C	C	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs252710570					SNP	C	C	C	C	C	G	G	C	G	C	C	C	G	C	C	G	C	C	C	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370743479	MGP_WTSI_7_19764539	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18913115 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18451	CpG island 18451	896 bp distal
Cpgi18452	CpG island 18452	within coordinates
Cpgi18453	CpG island 18453	1886 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Rr155272	regulatory region 155272	315 bp distal
Rr167138	regulatory region 167138	within coordinates
Rr167139	regulatory region 167139	1685 bp proximal
Tssr64795	transcription start site region 64795	951 bp downstream
Tssr64796	transcription start site region 64796	153 bp downstream
Tssr64797	transcription start site region 64797	1972 bp upstream