rs252715342 SNP Detail

Summary

• ID
  rs252715342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:108901732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTGGGGT TAGGCTGTCC
  TTAAATACTA AAGGACTTTT CATCATGACT AGGGGTGAAG GCAATAGACT CAGAGCAAGA
  ACGATCCTTA CACAATATTA AGTATCCGCT AATGAGATGA AGTATTACTC TACTGACCAA
  AAGCAATGTA TAGATCCTGC CCACATATGG GAGAGATCAA GAGCGGAGAC CACAGGACCC
  Y
  TCAGTGTCAC CCCATCAGCG TCTCTCCTCT GATGCCTCAC TGCAGCCTTT TGACTCACAA
  CAGAGCATCT GCGACCATGA TGTCTTTAAA CTACAGTATG CACCCCCAAA TCTTTCACTC
  AGAGAATCTC TGCCCTTCCC AGACTCCATC CCAGGCATCC CATTGCCTAG ATAAGAATTG
  AGGGTCCATT AGGAACTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384648974	MGP_WTSI_11_108872220	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252715342					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384648974	MGP_WTSI_11_108872220	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:108901732 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4049	CpG island 4049	736 bp proximal
Gm36876	predicted gene, 36876	within coordinates
Tssr105627	transcription start site region 105627	809 bp upstream
Tssr105628	transcription start site region 105628	909 bp upstream
Tssr105629	transcription start site region 105629	925 bp upstream
Tssr105630	transcription start site region 105630	963 bp upstream
Tssr105631	transcription start site region 105631	1080 bp upstream
Tssr111515	transcription start site region 111515	799 bp downstream
Tssr111516	transcription start site region 111516	865 bp downstream
Tssr111517	transcription start site region 111517	934 bp downstream
Tssr111518	transcription start site region 111518	954 bp downstream
Tssr111519	transcription start site region 111519	967 bp downstream
Tssr111520	transcription start site region 111520	997 bp downstream
Tssr111521	transcription start site region 111521	1082 bp downstream