rs252717840 SNP Detail

Summary

• ID
  rs252717840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184582775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCTGtaca gatggctgtg agccatcatg
  tgtttgctgg gaattgaact caggacctct gCTCGCTCCA GTCCCTCTCA CTCTGATCCC
  ACCTGATCCA GCCCaaattt atttattatt gtatgtaagt acactgtagc tgtcttcaga
  Y
  acaccagaag agggcgtcag atctcattat ggatggttgt gagccaccat gttgtgtctg
  ggatttgaac tcaggacctt cggaagagca gtcagtgctc ttgaccactg agctatctct
  ccagcccACA AGGCTAATTT TTGAGAAGGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169901	CHEV_1_186674457	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252717840					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184582775 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1164	CpG island 1164	1366 bp proximal
Gm34451	predicted gene, 34451	within coordinates
Rr372580	regulatory region 372580	548 bp downstream
Rr396695	regulatory region 396695	1775 bp upstream
Rr425307	regulatory region 425307	540 bp proximal