rs252718442 SNP Detail

Summary

• ID
  rs252718442
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110369058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCCATC ATCACCTTCA
  CCTCAGAGGA AGTGTTGACT GCAGACTGGG GGAGTCCGCC TGTCCAGGTT GCAACTTGGA
  GGGACTTGGC TTGCTCTGAA GAGGCTGGTA GTACCTGGTC CTCTCTAGGT GGGCTGGTGT
  GAGACTCTAA CCTTTCAGGC CTATCCATCC TTAGCCCAGC CTCAAACCTG AAATCCTGAA
  W
  ACAGGCGGAC TGGCTCTCAC CAGCATTGTG TTCTTTGAGA TAAAAGGTTT GCTTTTCCTG
  TTCTTACTCT TGCTGAGTCC CTCTTCAGAT GGCCTCTGAG TCAATCCCAG ATCTTGGCAG
  TATCTTGGGC AGGTGAAATG TAGGCTTAGA ATTAAGTTGG AATATACTTT TCTTTCCCAA
  AGCAATTCAG TGGCCTGTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322398784	CHEV_7_117913365	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252718442					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110369058 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	within coordinates
B430319F04Rik	RIKEN cDNA B430319F04 gene	506 bp upstream
Cpgi19579	CpG island 19579	618 bp distal
Rr653308	regulatory region 653308	1635 bp distal
Rr653309	regulatory region 653309	930 bp distal
Rr653310	regulatory region 653310	230 bp distal
Rr653311	regulatory region 653311	811 bp proximal
Tssr68503	transcription start site region 68503	1751 bp downstream
Tssr68504	transcription start site region 68504	1724 bp downstream
Tssr68505	transcription start site region 68505	1695 bp downstream
Tssr68506	transcription start site region 68506	1658 bp downstream
Tssr68507	transcription start site region 68507	1217 bp downstream
Tssr68508	transcription start site region 68508	1004 bp downstream
Tssr68509	transcription start site region 68509	775 bp upstream
Tssr74265	transcription start site region 74265	486 bp upstream