rs252719228 SNP Detail

Summary

• ID
  rs252719228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123302402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCAGAAG TCTCGTGGCT
  GAAGCTCTGG CGGTGCGCGC GTTTTCTCTT CTTGGCTGCG TTCTTCTCTG GGACCCAAAG
  TCTAAGGTCC CTTCGTTGCC GCCTCCCCCG GCATCACTTC CTATGGCGCC GGCCCTTTGT
  CCCCGAGAGC TGTTGGCGGC TCCTCTGCCC CCATCGGGGT TGATGGTTCC GCTTGCGCCC
  Y
  TCCGCTTGCC CTTTTGATCT GATCTCACTT TTGCCCGACA CAGCGCGCCG GAAGGTTTCT
  CGAACCGGGA GAACGGGAAG CCTGGGCAGT GCGAGCAGAC CCGCCCGGCC CTCGGCTTTT
  CCGGGAGGAA GGCATATCTC ACTCCCGCGT GCAGCCCGCT ATGAGACAGA ATAGAGGGCC
  TTTAGTGATG GAGTATGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359529447	MGP_WTSI_3_123211671	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252719228					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359529447	MGP_WTSI_3_123211671	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123302402 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	within coordinates
Gm9369	predicted pseudogene 9369	1189 bp downstream
Rr397991	regulatory region 397991	1719 bp downstream
Rr584523	regulatory region 584523	1834 bp distal
Rr584524	regulatory region 584524	1699 bp distal
Rr584525	regulatory region 584525	within coordinates
Rr584526	regulatory region 584526	166 bp proximal
Rr584527	regulatory region 584527	557 bp proximal
Snhg8	small nucleolar RNA host gene 8	417 bp upstream
Snora24	small nucleolar RNA, H/ACA box 24	687 bp upstream
Tssr31551	transcription start site region 31551	185 bp downstream
Tssr31552	transcription start site region 31552	138 bp downstream
Tssr35502	transcription start site region 35502	412 bp upstream
Tssr35503	transcription start site region 35503	162 bp downstream