rs252722064 SNP Detail

Summary

• ID
  rs252722064
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:109739277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAACCAA ACAGAAATAC
  CCCCCTATTC AGTCTCCTAA GCACATGGAC AGGAGAGGAG AACACACTTG CTCTCAGCCA
  ACAATTCTAT GTGGACAATT CAAGCAAAGG AAAAAAAAAA AAAAAAAAAA AAAGGAAGTC
  GTTGCTGGTT TTCCTTCCAG TCTGTGCCAA ATGACTCCTG ACATGAGACC TTTCACAATT
  R
  TCCCTGCTGG ACCAAGACCC AGTTTCAAGG AGTCTCAGTG AATGAGTTAC TCTGGTTAAC
  AAAATGCACA CACATGGGAG GCACATGGTT TAACGAACCT TTCATTTCTG ACAATGCTAT
  ATGTGTAAAG AACACTGTTC CAACTATTTC AAAGTACGGC CAGAATATCC CTTTCAGTCT
  CTCATAAACG CATTTCATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323458398	CHEV_10_109340472	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252722064					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:109739277 () rs orientation: forward

Symbol	Name	Function Class
Nav3	neuron navigator 3	within coordinates
Rr212647	regulatory region 212647	1524 bp proximal
Rr224236	regulatory region 224236	323 bp proximal
Tssr99236	transcription start site region 99236	398 bp downstream
Tssr99237	transcription start site region 99237	414 bp downstream
Tssr99238	transcription start site region 99238	436 bp downstream
Tssr99239	transcription start site region 99239	459 bp downstream
Tssr99240	transcription start site region 99240	495 bp downstream
Tssr99241	transcription start site region 99241	536 bp downstream
Tssr99242	transcription start site region 99242	596 bp downstream