rs252723927 SNP Detail

Summary

• ID
  rs252723927
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106477774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAA GAGGTACAAA
  ATTAATAAGG GAAGCTCTTA CACCACATCA TGGATAAAGT TTGAAGTCAT TATGCTAAAT
  GATAAGGCAG GCATAAAAAA ACCCAAATAT TATTTCACTT ACTTGAAGTG TTACCGTATT
  CAAATGTGGA AAGAGAAAGT GGAGTGGCAG TTACTGGGCA CTTGAGGACC TTTTTGGAGG
  R
  AAGAGTGGGG ACTGGGATGG GACCTTCTCT ATTTCCATCT CAGAGCTACA TTAAATGGAG
  CCGGGCGTGG TGGCGCACGC CTTTAATCCC AGCACTTGGG AGGCAGAGGC AGAGGCAGGC
  AGATTTCTGA ATTCAAGGCC AGCCTGGTCT ACAAAGTGAG TTCCAGGGCA GCCAGGACTA
  CACAGAGAAA CCCTGTCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321246841	CHEV_4_106293182	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252723927					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106477774 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14527	CpG island 14527	1806 bp proximal
Gm69799	predicted gene, 69799	1093 bp downstream
Rr596779	regulatory region 596779	1342 bp distal
Rr596780	regulatory region 596780	1365 bp proximal
Tssr38185	transcription start site region 38185	1847 bp upstream
Tssr38186	transcription start site region 38186	1909 bp upstream
Tssr38187	transcription start site region 38187	1951 bp upstream
Ttc22	tetratricopeptide repeat domain 22	1872 bp upstream