rs252724925 SNP Detail

Summary

• ID
  rs252724925
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131197141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATTTCTTT GGAGTCGTTT
  CCACACCTTG TAGCAGTTTT CAGTCAACCA CGGTCGTTTT GGAGGGTGTC ACTAGGCATC
  CAGGCAGCTG GCTAAACCTC CAATGAGTTT AATTGATAGA AATGCTTTTT ATTGCATTGC
  CTACTTCCCT TCTGGTTTTA AGTTTGAACG TGTAGGATTG TACAGACTGT CCTATGGGAG
  W
  TAACATAATC CACAAAAACA ACAATAAGCA TTTCTGGTGT TTTGTGTGGG TATCATTTGT
  GTCAATAATC ATTAAACCCA ATGGCAGCAA AATAGAACTT TGGAGGGGAG GTGCCAAGGT
  GGCAGGTCAC AGATGATGTC ACAATCCAGA AGTTTAAGTT AACCTCTCCT GCAATTAACC
  ACAGGTTAGA CTTCATTGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359739322	MGP_WTSI_3_131154344	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252724925					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359739322	MGP_WTSI_3_131154344	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131197141 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13839	CpG island 13839	442 bp distal
Gm36753	predicted gene, 36753	within coordinates
Rr585351	regulatory region 585351	976 bp distal
Rr585352	regulatory region 585352	97 bp distal
Rr585353	regulatory region 585353	694 bp distal
Rr585354	regulatory region 585354	1169 bp proximal
Sgms2	sphingomyelin synthase 2	within coordinates
Tssr1055	transcription start site region 1055	1651 bp downstream
Tssr1056	transcription start site region 1056	1349 bp downstream
Tssr31735	transcription start site region 31735	1627 bp downstream
Tssr31736	transcription start site region 31736	975 bp downstream
Tssr31737	transcription start site region 31737	179 bp upstream
Tssr35709	transcription start site region 35709	1623 bp upstream
Tssr35710	transcription start site region 35710	1606 bp upstream
Tssr35711	transcription start site region 35711	1444 bp upstream
Tssr35712	transcription start site region 35712	1414 bp upstream
Tssr35713	transcription start site region 35713	1145 bp upstream
Tssr35714	transcription start site region 35714	885 bp upstream
Tssr35715	transcription start site region 35715	849 bp upstream
Tssr35716	transcription start site region 35716	714 bp upstream
Tssr35717	transcription start site region 35717	638 bp upstream
Tssr35718	transcription start site region 35718	612 bp upstream
Tssr35719	transcription start site region 35719	369 bp upstream
Tssr35720	transcription start site region 35720	323 bp upstream
Tssr35721	transcription start site region 35721	92 bp upstream
Tssr35722	transcription start site region 35722	44 bp upstream
Tssr35723	transcription start site region 35723	6 bp downstream
Tssr35724	transcription start site region 35724	19 bp downstream
Tssr35725	transcription start site region 35725	57 bp downstream