rs252729371 SNP Detail

Summary

• ID
  rs252729371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:21504588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGTGGGT GGCTCGAGTG
  GTCGAGTCCT TGTCACCGCA GCTCTTTTTT CCCCTCAGGC ACCTGGGCCG GCGCGCTGCT
  CCGGGACTAC GCTGAGGCGT GCGGGGACGC GGCGGCTGCG GCGCGAGCTC GACCGGGCCG
  CGCGGCCCTG TACGTGGGGC TTCTGGGCGG CGCGGCTGCG TGCTGCGCGC TGGCGCCCAG
  Y
  GAGGCGGCCT TCGAGGAGGC CTTGCTGGAC GCATCGGGGT CACTGTTGCT CTTGGCACCG
  GCCACGCGCA ACCGCCACTC GGAGGCGTTC CTGCAGCGCC TGCTGTGGCT GAGGGGCCGT
  GGGCGGCTGC GTCACGTGAA CCTGGGCTTT TGCTCGCTGG TTTACGAAGC GCCCTTCGAC
  GCCCAGGCCA GCCTCTACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376869908	MGP_WTSI_9_21397736	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252729371					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376869908	MGP_WTSI_9_21397736	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21504588 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21447	CpG island 21447	within coordinates
Rr674932	regulatory region 674932	1856 bp distal
Rr674933	regulatory region 674933	560 bp distal
Rr674934	regulatory region 674934	within coordinates
Rr674935	regulatory region 674935	71 bp proximal
Timm29	translocase of inner mitochondrial membrane 29	Coding-Synonymous
Tssr84024	transcription start site region 84024	394 bp downstream
Tssr84025	transcription start site region 84025	329 bp downstream
Tssr88402	transcription start site region 88402	497 bp upstream
Tssr88403	transcription start site region 88403	446 bp upstream
Yipf2	Yip1 domain family, member 2	464 bp upstream