rs252739598 SNP Detail

Summary

• ID
  rs252739598
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:61677864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGGGAGTT GCTAGGCCAG TTTCCTATCT
  ATTCCAAGTG TGCTTTATGA GATCCGGTTT CAATTCCCCT GTGGTAGCTC CCAGATCCCG
  TTACAATTCC CGGAGCTCCT TGTACATGTG AGGGAGAAAG AGAACCAAGT GCGGGCAACA
  R
  GCTACCCAAG GTCTAGTTAC TGGGGCAACC CCGGGCTCGG TGCAACGCCT CGGTGCGCTC
  TGTGGTCCGC GAGCGCCGCG GCCCCTTTAA GAGCCGGGCC CAGGCTGGCC CGCGGGCCGA
  GGGAGCCCAG AGCGCCGCGC GCGTCGGAGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319741953	CHEV_1_61685279	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252739598					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:61677864 () rs orientation: forward

Symbol	Name	Function Class
Cpgi308	CpG island 308	within coordinates
Pard3b	par-3 family cell polarity regulator beta	119 bp upstream
Rr29520	regulatory region 29520	within coordinates
Tssr95	transcription start site region 95	207 bp upstream
Tssr6971	transcription start site region 6971	114 bp upstream
Tssr6972	transcription start site region 6972	164 bp upstream
Tssr6973	transcription start site region 6973	237 bp upstream
Tssr6974	transcription start site region 6974	288 bp upstream